W. Lee Pang, PhD

WES Endpoint URL returned by `agc context describe` is incomplete

1

[//]: # (Please do not include your AWS account or credentials as part of the bug request.) **Describe the Bug** [//]: # (Please describe the behavior that you are seeing...

`agc logs workflow` output does not use the configured formatter

1

[//]: # (Please do not include your AWS account or credentials as part of the bug request.) **Describe the Bug** [//]: # (Please describe the behavior that you are seeing...

only specific instance types and not instance families can be listed in `context.instanceTypes`

2

[//]: # (Please do not include your AWS account or credentials as part of the bug request.) **Describe the Bug** [//]: # (Please describe the behavior that you are seeing...

Add workflow specific engine logging to WES GetRunlog response

2

[//]: # (Before raising the feature request, please check to see if an existing feature request already exists.) **Description** [//]: # (A short description of the feature you are proposing.)...

feat: add native support for execution on AWS Batch

9

### Description Adds an executor that allows Snakemake to schedule workflow tasks directly to AWS Batch. This executor was developed by the Amazon Genomics CLI team. ### QC * [...

### Checklist - [ x ] Pull request details were added to CHANGELOG.md - [ x ] Valid examples WDL's were added or updated to the SPEC.md (see the [guide](https://github.com/openwdl/wdl-tests/blob/main/docs/MarkdownTests.md)...

The following configuration: ``` filesystem: fsType: EFS configuration: provisionedThroughput: 1024 ``` https://aws.github.io/amazon-genomics-cli/docs/workflow-engines/filesystems/efs/#provisioned-iops Would create an EFS filesystem with 1024 MiB/s provisioned throughput. Based on the AWS Calculator, this would result...

Workflow definitions that include a `workflow.zip` file fail parsing in CromwellWESAdapter

1

[//]: # (Please do not include your AWS account or credentials as part of the bug request.) **Describe the Bug** [//]: # (Please describe the behavior that you are seeing...