Wenke Zhang

The number of variations in the pan-genome is reduced compared to the variations in the input VCF file

2

Do vg filter out some variants during the construction of the pan-genome, and if so, what are the criteria for filtering? The number of variations in the pan-genome is reduced...

We want to use vg to construct a pan-genome. In order to detect variations in the subsequent pan-genome graph and determine which genomes they exist in, we intend to retain...

Some bases in the “REF” column are incorrect, and this occurs in INS (insertion) types.

1

After detecting structural variations (SVs) using the default parameters of CuteSV, I found that the bases of “REF” in some INS (insertion) events in the vcf do not match those...

HI! SVMU is a very good tools to detect SVs comparing others. My code is "svmu ref_qry.filted.delta ref.fa qry.fa l null ref_qry" , but some “sv.prefix.txt” is empty with [0.4-alpha](https://github.com/mahulchak/svmu/tree/0.4-alpha)...