hkim

Failed to run vcf2maf for a vcf file cleaned with vcf2vcf

1

Hello, I applied `vcf2maf` to a vcf file cleaned with `vcf2vcf`. The original vcf was an output from `pindel`. I have the following error from running `vcf2maf`. Would you please...

Support for PBS msub

2

Hello, It looks like FALCON only supports SGE qsub. I wonder if FALCON could support PBS msub. FYI: Our PBS header includes: ``` #PBS -N anystring #PBS -l nodes=1:ppn=24,walltime=24:00:00 #PBS...

it fails on slurm

1

Hi Sahil, According to , flowr should support **slurm**, but my test failed. Would you help me with this issue? Thanks in advance,  ``` flowr run x=sleep_pipe platform=slurm execute=TRUE...

failed to run RNAseq

1

Hi, I was able to successfully use your tool to detect sample mislabelling; however, it didn't run for RNAseq from the same samples as WES. For both RNAseq and WES,...