wingwingWY

long run time for ra

5

Hi I ran RA for a plant genome with genome size 1G and 50X nanopore reads. The program has been running for 1700cpu hours and still running. The log last...

how to run autoAugTrain.pl with genetic code 6

3

Hi I want to train model by autoAugTrain.pl in augustus package with genetic code 6 . How to change the default translation table ?

run npScarf crashes

1

Hello, I run npScarf with nanopore reads for scaffolding spades assembly result. my shell is: $myexe/jsa.seq.sort -r -n --input $inputfa --output sort_spades.fasta &> $outfile bwa index sort_spades.fasta &>> $outfile bwa...