Billy Rowell
Billy Rowell
pbsv is a suite of tools to detect and call structural variants from PacBio CLR or HiFi reads. I have added wrappers for the discover and call subcommands.
https://github.com/lh3/yak/blob/6de3affe265bb0508ed6d78b36f121bdaf796f71/triobin.c#L176 Do you have any updated documentation for the output of `yak triobin`? I'm looking at the output of verison r43, which has 13 columns as opposed to the 10...
Are there any plans to implement the `runtime` `gpu` attribute or to add `hints`? I'm interested in extending `miniwdl-slurm` to specify slurm partitions and schedule GPUs, but I need to...
### Bug Description API documentation example for "Clear a forwarding address" has the same command as "Set multiple forwarding addresses". Commands are correct in [Email.postman_collection.json](https://github.com/neatnik/omg.lol/blob/main/api/docs/Email.postman_collection.json). ### Steps to Reproduce _No...
If the sample name isn't sanitized in the expected way (e.g., contains a `.`), the output names may be non-unique. For setting the prefix, I recommend determining the sample name...
- tabs -> spaces - populate meta and parameter_meta - standardize input and output names - flatten inputs and outputs by removing IndexData objects - refactor many HiFi-human-WGS-WDL tasks into...
- [pbmm2 1.13.1](https://github.com/PacificBiosciences/pbmm2/releases/tag/v1.13.1) - Suppress scary index warnings from BAM stats script - [TRGT 0.7.0](https://github.com/PacificBiosciences/trgt/releases/tag/v0.7.0) - [Paraphase 3.0.0](https://github.com/PacificBiosciences/paraphase/releases/tag/v3.0.0) - [DeepVariant 1.6.0](https://github.com/google/deepvariant/releases/tag/v1.6.0) - Custom DeepVariant models are now passed as tarballs
## Organisation - Name: medRxiv - Website: https://www.medrxiv.org ## Scope Preprint server (sister service to bioRxiv) for health sciences. ## Technical checks Confirm each of the following by checking the...