Will Dumm

In order to apply a move to the mutation annotated DAG, we would require not only a source and target node, but we also need to compute the mutations on...

Hmm, thanks for looking into it! I must be doing something wrong, since I'm getting the error both on my Mac and in a local Conda build on our Ubuntu...

I find a similar (and probably related?) error happens when calling `Tree.render`. Using linux Conda, Python 3.10.2, ete3 3.1.2, pyQt5 5.15.6: ```python import ete3 tree = ete3.Tree() tree.render('test.svg') ``` the...

Update: This issue continues to pop up occasionally. The thing that consistently fixes it is downgrading to python 3.9.7. For instance, the test in my last comment runs as expected...

I've noticed the same behavior using MrBayes 3.2.7a with Beagle on a bunch of simulated datasets. Maximum parsimony trees on these data are highly multifurcating, so we would expect a...

@nylander I built MrBayes on both the `develop` and `master` branch, with mpi but without Beagle, and they both work as expected on the test data ```bash $ mb -v...