Will Graham

Also going to bump this - most of the atlas generation scripts themselves follow the same pattern: get template, structure heirachy, wrap up. In the majority of cases these are...

@adamltyson > Can this be reproduced locally be limiting the number of CPUs cellfinder can use? This may explain why it only happens on the relatively low-spec GitHub actions runners....

> ConnectionResetError: [Errno 104] Connection reset by peer and > raise EOFError both raised in `_recv` which (I presume is multiprocessing's method of passing information between pooled threads). Maybe we're...

> Can we just run the test suite keeping at least one CPU core free? [Change this to be one_free_cpu](https://github.com/brainglobe/cellfinder/blob/560909ff6eb74072d970b4752665a29382be368a/tests/core/conftest.py#L12-L17). I feel like this isn't the healthiest approach - I...

> This happens on HPC systems too (other than SLURM which we explicitly support), when the number of cores that's available doesn't match the number of cores Python can "see"....

Hi @bmcutler, > Additional information: > > This bug was probably caused by manual importing of student files & database content for a gradeable and perhaps the database has an...

Happy to hand this over to you if you'd like it. As you say, it'll also be a good check that we're implementing the features in a sensible / intuitive...

We should brainstorm the core features that RoIs need to have - this will enable us to design the class skeleton from this. Features that are critical for RoIs to...

Had a play with `shapely` in #390, and with a bit of effort managed to get some basic wrappers written. Main difficulty is that `shapely` classes are a pain to...

@niksirbi @sfmig I've opened #416 which should encompass everything we need in this issue. I have tried to please all parties and be as precise as possible, but there's a...