groot

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Abundance table

2

Hello, Thank you for this great pipeline! Is there a way to merge all groot reports into a single abundance table in a similar way to ASVs/OTUs tables? Thanks a...

mhmism

groot-db output issues

2

Hi! I am exploring the option of using groot-db as it combines 3 well used AMR databases. I believe that this is a very good idea but i am facing...

LeonardosMageiros

At the moment the graph is essentially in GFA format anyway as GROOT converts the input MSA to GFA before indexing, but it then serialises it with MessagePack. Could just...

will-rowe

Paired-end reads information

1

Dear Authors, Thank you for creating a great tool! I was wondering a bit about running your tool with paired-end data. I see you mention that the tool does not...

hkaspersen

Hi, I'm currently testing GROOT on Nanopore data and am getting this error --> panic: k size is greater than sequence length (31 vs 1). Please let me know if...

taylorjohnsonm

Hi, I'm trying to get the CARD database, but I have the following output: (groot) kayobianco@arqueas:~$ groot get -d card downloading the pre-clustered card database... unpacking... could not unpack the...

kayobianco