Will Moore
Will Moore
See https://github.com/glencoesoftware/bioformats2raw/issues/187 Conversion of images using bioformats2raw fails due to memory issues.
Hi, I'm using @ilan-gold's nice sample code at https://anndata.readthedocs.io/en/latest/tutorials/notebooks/%7Bread,write%7D_dispatched.html to read remote anndata, which is working great when I'm serving data locally via http. But when I'm using minio to...
The NGFF spec will soon include `coordinateSystems` - see https://github.com/ome/ngff/pull/138/files#diff-b4ce457ec27ea3a1593641d39e0bf2e1baef2011c4d0cab91afd067a88aea47d so that instead of there being a top-level `multiscales[0].axes`, there is a top-level `multiscales[0].coordinateSystems` list, each one has an `axes`...
Several forum discussions etc have asked for more detailed examples on how to write OME-Zarr. WIP...
Various scaling issues have been reported. These are due to the initial Scaler designed to scale planes (or a series of planes) in 2D and to work with numpy arrays...
See https://github.com/tlambert03/napari-omero/pull/14#discussion_r446664444 When opening an Image from OMERO, it will be useful to store the ID of that Image in the layer metadata, E.g. ```get_omero_metadata()``` could include ``` 'metadata': {'omero_id':...
See https://github.com/tlambert03/napari-omero/pull/17#pullrequestreview-441080882 Use [`napari_write_shapes`](https://napari.org/docs/plugins/hook_specifications.html#napari.plugins.hook_specifications.napari_write_shapes) and [`napari_write_labels`](https://napari.org/docs/plugins/hook_specifications.html#napari.plugins.hook_specifications.napari_write_labels) writer plugins to allow saving ROIs to OMERO. This has the advantage that we don't need to clutter the UI with "Save to OMERO"...
Fixes #473 This improves the error handling for loading image metadata. Previously we only handled `404 Image not found`, but if any JSON data was returned, even with exceptions, then...
This replaces (builds on) #464 and #456 and also supports movie playing waiting on image loading. These PRs are combined to avoid conflicts, since the functionality is all related. Also...
Various errors in Rendering Engine, or corrupt images etc can cause the imgData JSON loading to fail completely or to return incomplete JSON. In most cases, errors are not shown...