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                                            wiebepo

diamond blastx support for IUPAC ambiguity code

It appears that when diamond blastx encounters a codon that contains a nucleotide IUPAC ambiguity code , "RYWSMKHBVDN", the resulting amino acid is "X"; however, in some cases, codons that...

feature request

Bowtie2-build "Doing ahead-of-time memory usage test" requires >5 times the amount of memory than is used by the subsequent process.

Using a 148GB fasta file as an input, the bowtie2-build -p command performs a memory test of ~3.3 TB; however, the indexing process does not consume more than 1 TB...

Spades fails to compile from source on an aws r7i.2xlarge instance

### Description of bug We migrated our Jenkins server to an r7i.2xlarge instance (8 vCPU, 64 GiB, DDR5 memory). One of our Jenkins jobs includes building spades from source. Here...