Leighton Pritchard
Leighton Pritchard
Currently, the code writes out all results individually and leaves processing output for calculation of ANI etc. until the end. This leaves an uninformative, and long, lag time before the...
While investigating an error in `ncfp` I came across a problem stemming from `bioservices`. Following the "Quick Example" in `README.md`, I prepared a short Python script called `test_bioservices.py`, containing: ```python...
OS: macOS 12.1 To reproduce: In `conda` environment (Python 3.9, `boost` installed _via_ `conda`) ```bash $ git clone [email protected]:ParBLiSS/FastANI.git # repo at commit 2a1e83f $ cd FastANI $ ./bootstrap.sh $...
We have a few options for presentation of the course. As we've been ambitious, working across browser, terminal and notebooks, some of the options are less well-integrated than others: -...
Though not required for `poRe`, `optparse` is necessary to run the scripts for [`poRe_scripts`](https://github.com/mw55309/poRe_scripts)
After installing dependencies, command-line installation fails on OSX High Sierra with the `.zip` file Sourceforge provides: ``` $ R CMD INSTALL poRe_0.24.zip Error in rawToChar(block[seq_len(ns)]) : embedded nul in string:...
As part of the [genomeRxiv project](https://genomerxiv.cs.vt.edu/index.php), we developed a new and improved implementation of average nucleotide identity methods that scales better on a wider range of computing environments. Please use...