Leighton Pritchard

I should really write this stuff down somewhere ;)

This is another thing that should go into the doumentation - the design goals and motivation for the database integration and how that affects the way we need to provide...

> Which part of the documentation? Design goals and motivation sounds like wiki material; It does. > there is already a bit of text in `indexing.rst` that seems related to...

Thanks @dparks1134 - apologies for the bug, and we'll deal with this as a priority. Quick notes - although it stems from the same misunderstanding of/assumptions about `mummer`'s operation, this...

NOTE: Handling under branch `issue_373` for version 0.3.

> I think perhaps the test outputs might need to be updated; (they pass, but this might just mean the differences fall within the designated tolerances). I think your guess...

In the interim, it ought to be straightforward to produce a dendrogram in `R` or similar by taking in the ANI matrix and using hclust. You'll get more control over...

@baileythegreen is working on this, just now. There should be a `pyani tree` option in v0.3 coming soon.

Can confirm the format works with `FigTree` - thanks @baileythegreen

Many thanks @TSL-RamKrishna - that's great! As it happens I've just got access to a SLURM cluster, so I can actually try this out.