whottel

Add ncov-recombinant v0.6.1 APHL Docker Workshop

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This PR is for ncov-recombinant version 0.6.1. The dockerfile uses micromamba as the base image. Pull Request (PR) checklist: - [X ] Include a description of what is in this...

Panaroo vs. Roary

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Hello, I went back through an old cluster analysis to see what differences in interpretation would potentially arise in using with an older grandeur version that uses roary versus newer...

Nucleotide insertions not shown in peptide tooltip, causing confusion in case of frameshift due to nt insertion

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Hello, I recently uploaded a few Mpox sequences into the the web version of Nextclade. I noticed several of these had a OPG069:45-167 frame shift flagged.  Looking...

Hello, I am running into an error when trying to run gubbins on the PMEN1 dataset described here: https://github.com/nickjcroucher/gubbins/tree/master/example_data/PMEN1 When running the command: `run_gubbins.py --prefix PMEN1 --first-tree-builder rapidnj --first-model JC...