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                                            whiteorchid

intersect result is wrong compare to bedtools intersect

Thanks so much for the great tool of intervene! I have some doubts and wish can have your guidance! It seems the --bedtools-options r ("bedtools intersect -r ") is default...

hugo -> entrez incomplete

Dear author, I used the getBM function to retrieve the gene names of the ensembl IDs (results by RSEM), while the numbers are not equal, is it still possible to...

Output of FASTQ or QUAL in addtion to FASTA

Is it ok to just convert the fasta output to fastq format use other tools?