Bill Flynn comments

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                                            Bill Flynn

Unable to load run_report.yaml

Any updates on this issue? Snooped around the dev branch and it looks like it's still custom formatting rather than using `pyyaml` or another package. Currently getting around it by...

evalf(subs) does not do the substitution

Similarly, there is unexpected behavior for evaluating functions at asymptotes: ``` >>> x = Symbol("x") >>> N(cot(x),subs={x: 0}) cot(x) >>> N(cot(x).subs(x, 0)) zoo ```

Justify citekeys in list command

FWIW, I have this implemented in my personal build and it greatly improves readability for me. > We might want a config option to overcome this as well as a...

Justify citekeys in list command

Thoughts on specific formatting? A: [citekey1 ] description B: [citekey2] description I've also added configuration options for the following two things: 1. wrapping long lines at specified width (and for...

Sort the output of the list command

Agreed. I think the following options should be included: -r, --reverse -o, --order field1[,field2,...] so that these use cases can be supported: pubs list -r pubs list -ir -o author,date...

Sort the output of the list command

I'd also argue if changes are coming to `list_cmd`, then citekey justification on listing should be added too (e.g. adding some string formatting to `pretty.py: paper_oneliner`), though this should probably...

Interest in HTO/ADT demultiplexing and analysis?

@falexwolf Mostly just following along with the Seurat vignettes here using scanpy: * [Demultiplexing with cell hashing](https://satijalab.org/seurat/hashing_vignette.html) * [Multimodal analysis with CITE-seq ADTs](https://satijalab.org/seurat/multimodal_vignette.html) Mostly I'm using [CITE-seq-count](https://github.com/Hoohm/CITE-seq-Count) to generate counts...