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PDV - Mac

1

The files in a folder doesn't show when the GUI is opened by double-clicking: 

wenbostar

The peptide sequence is gone from the export panel for some cases:  

wenbostar

how to visualize maxquant results by using PDV command line ?

5

my command: java -jar /share/liuqi/ganyuli/proteome/software/PDV-1.7.4/PDV-1.7.4.jar \ -r combined \ -rt 5 \ -s . \ -st 1 \ -i tab2.txt \ -k s \ -o output \ -a 0.5 \...

BiGump123

Exporting report doesn't work as shown below:  ``` Exception in thread "Export" java.lang.ArrayIndexOutOfBoundsException: Index 1 out of bounds for length 1 at PDVGUI.gui.PDVMainClass.getSpectrum(PDVMainClass.java:3912) at PDVGUI.utils.ExportReports$1.run(ExportReports.java:152) ```

wenbostar

Exception in thread "DisplayThread" java.lang.NullPointerException

4

Hi, I have encountered an issue when i check the spectrum of file generated from MaxQuant. The log is following: Wed Aug 23 11:39:23 CST 2023: PDV-1.8.1 The local country...

Yck711

Support for MaxQuant 2.4.2.0?

4

Hi all, I guess this is not an issue but I was wondering if PDV also supports MaxQuant results from the newer versions. I have a lot of timsTOF data...

rugenni

Saving files on PDV from Fragpipe

1

I'm able to import result and view from fragpipe but I would like to save all the result so I can go back to it later

tygrad

The m/z values for neutral loss are not correct:

wenbostar

The font size/distance of "iH" looks like to be different from others such as iK, iQ: 

wenbostar

 After manully changed the color to blue, the color of the modified amino acid matches well with the setting: 

wenbostar