Wei Zhu

coverage of the customized genome

2

Dear Brent; I build a customized genome sequence by adding a new sequence "VectorA" (~ 10kb) to hg19, and I would like to have coverage of the VectorA via your...

How to add new add-on software to elasticluster?

2

Dear ElastiCluster developer; I have used ElastiCluster to create an SGE cluster successfully. I still need to install some dependencies to run some Snakemake jobs on the cluster. It is...

```text dumpSTR --vcf output/gangstr/SC074198_chrX.vcf --out output/dumpstr_call/SC074201_chrX --gangstr-min-call-DP 20 --gangstr-max-call-DP 1000 --gangstr-filter-spanbound-only --gangstr-filter-badCI Traceback (most recent call last): File "/data/zhuw10/conda_envs/snakemake/bin/dumpSTR", line 10, in sys.exit(run()) File "/data/zhuw10/conda_envs/snakemake/lib/python3.10/site-packages/trtools/dumpSTR/dumpSTR.py", line 1272, in run retcode...

( AC / NUM_MERGED_SVS ) < 25

1

"( AC / NUM_MERGED_SVS ) < 25" is part of the published paper of GraphTyper2. I cannot figure out what its purpose is. Could you explain it to me? Thanks,...