Thomas Weber
Thomas Weber
Hi @ewels ! I'm struggling to solve CI issues here with this new module, here a part of the logs: ``` | report | LINT: HTML ID was a duplicate...
> Yeah I desperately need to merge another PR for DRAGEN to solve these - it's not your PR that's at fault. > > I'm trying to implement some new...
Hi @vladsavelyev ! :) Thanks for the reviewing! I wanted to filter out some columns to be included into the report but didn't find a good way to do it,...
Seems to work! Let me know if I still need to modify something :)
Same issue using that command on snakemake 8.10.7: ``` snakemake --sdm conda apptainer --conda-frontend mamba --forceall -j1 --executor slurm --set-resources preprocess_data:constraint="rome" --apptainer-args "--bind /g:/g" ```
Hi @vsoch, @fgypas , thanks for all the developments on the project! what is the current roadmap regarding this ? I tested panoptes quite intensively over the last 6 months...
Still not fixed in 8.14, same issue
I tried with v1.1.4 and have exactly the same issue.
Hi @fawaz-dabbaghieh, thanks for reaching and sorry for the delay! I'm aware of the issues regarding snakemake v8 and will update the guidelines concerning MosaiCatcher. I'm working on a fix...