Wouter De Coster
Wouter De Coster
Due to the increased accuracy of long-read sequencing technologies, multiple people asked for more useful quality cutoffs in the NanoStats.txt file. Those changes were made a while ago, in nanomath,...
You mean to go back to the older quality cutoffs? There is no parameter exposed to change this, at the moment, but you could edit the code manually to get...
See also https://github.com/wdecoster/NanoPlot/issues/111 And there is a `--color` argument to change the color. Does that help?
I think you are right and this is an error! I'll do my best to fix this soon, or you are welcome to open a pull request :)
Hi Jim, Thanks for letting me know! Skipping some bases sounds entirely reasonable to me, dealing with issues because of adapter sequences and the start of the read. I might...
Hi - is there a timeline for updating this?
> It will need the user to be a little more familiar with JavaScript though. Yeah, about that... :-p
Could you see if [NanoComp ](https://github.com/wdecoster/nanocomp) solves your problem? You can run it with all the fastq files as input, and each will be processed as a separate dataset.
Hi Mari, Your first explanation was correct, it shows the distribution of the average quality score for each read. Wouter
Hmm could you check which plotly version you have and try updating that? Wouter