wconnell

I'm not an expert in this field but I work adjacent to it. So I don't have a great grasp on SOTA models that would serve folks best. Papers with...

I think that is a good place to start. It would be interesting and useful to get a benchmark going with the models right here. I would be interested to...

I am running into a similar issue, CentOS7, python 3.8, pytorch 1.8, cuda 10.1. Pytorch works so not sure what the compiler warning is from. Another strange point -- I...

i'm having hanging issues with this when using DDP and allocating the datasets with `split_dataset_by_node` 🤔 --- ### edit I don't want to pollute this thread, but for the sake...

Hi David thanks for getting back to me quickly. I am referring to the computed 1000 Genomes [variant effects](https://console.cloud.google.com/storage/browser/basenji_barnyard/sad/human). It looks like each variant is annotated with chr:pos:rsid:ref:alt. I am...

Following up on this - are the Enformer variant coordinates from hg19 or hg38? The Enformer preprint reads: > The model was trained, evaluated, and tested on the same targets...

I noticed this about the counts too...

Thank you for clarifying @LuckyMD; I found the detail in the Sup Info that Villani was excluded from scran norm b/c only TPM was provided. I'm not sure about the...