Douglas Wu

Hi, I would be happy to contribute to this. Am I correct that "long runs of As" are as defined by ```past_end_bases``` under ```Detector``` class?

@jdidion ah thanks, I see! I am seeing the current implementation uses the option ```-past-end-bases``` that accepts regex, so it seems to take care of it. Or should it be...

Thanks for the explanation, I think I am starting to get it. So am I right that we are assuming (1) sometimes adapter are not on the 3' end of...

Agree, this issue (#26) will require some careful thoughts and design. I will see what I can do with #65, which will likely be a very helpful feature for my...