wangshun1121

Since the coverage of this site on tumor is over 200X, is that meant that the coverage on normal should be at least 100X?

I tried to use simulated reads or normal reads (e.g, reads of NA12878) as normal, panel sequences as "tumor", using strelka2 somatic method to call variants. I can get variants...

Reads with bad quality should be marked rather than removing them directly. Here's my simple perl script `MarkBedQUAL.pl` : ``` #!/usr/bin/env perl while(){ if(m/^\@/){print $_;next;} @a = split/\t/; if($a[4] align.bam...

> Better, now i get this error > > Error of communication with Cytomine core > >  Same error in my machine!