curatedTCGAData
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waldronlab
Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
Seems like there should be a default version number (probably 2.0.1, which would be the default preference for most users), so that the default invocation doesn't result in error. Why...
I am finding it challenging to convert the RaggedExperiment to a more MAF-like tabular form. Am I missing something? Maybe we should add a component with MAF content, perhaps as...
Hi Levi and Marcel, I was wondering if it would be possible to implement a simplified methylation data set. As you know the raw methylation data is quite unwieldy so...
_From @vjcitn on June 4, 2016 20:57_ ov is the readRDS of what we have in the S3 bucket > table(pData(ov)$radiation_therapy, exclude=NULL) no yes 557 5 29 > table(pData(ov)$chemo_therapy) >...
``` > gbm gbm A MultiAssayExperiment object of 3 listed experiments with user-defined names and respective classes. Containing an ExperimentList class object of length 3: [1] GBM_CNVSNP-20160128: RaggedExperiment with 146852...
I am looking at clinical data for melanoma, but there's too much of it. ```r melanomaMicroRNA
Hello, I am trying to download a few TCGA RNASeq datasets separately but for some reason, I ended up creating a snapshot of an instance when I had downloaded BRCA...
```r > curatedTCGAData::curatedTCGAData(c("ACC", "COAD"), "RNASeq2GeneNorm", version = "2.1.1", dry.run = FALSE) [truncated...] [3] ACC_RNASeq2GeneNorm-20160128: SummarizedExperiment with 17716 rows and 0 columns ```
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Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects