Jeremiah Wala
Jeremiah Wala
Is there a preferred format for this header? This would be easy to incorporate, just give me the format.
What OS are you compiling on? I've heard of issues with this on OS X. The dependency comes not from bxtools, but from htslib. ([see this thread](https://github.com/samtools/htslib/issues/490)). It is needed...
Thank you for the explanation @jmarshall , that is very helpful. I was tricked by the const -ness of the `faidx_t` pointer, but if it is moving around a file...
Hi Julian -- so I'm looking back and I think I had made some of these submodule changes above that you suggested, but on the "cmake" branch. Do you use...
That would be great if you could try it and see if that works, then I can just move it over the main. I haven't built my own tool with...
The error comment I think could be better worded. What it is catching is an attempt to find a chromosome string from the BED file in the BAM header. Can...
I'm not able to re-create, but you could try adding this to the `try` block of `svabaUtils.cpp` right after `file_regions = SeqLib::GRC(region_file, h);` ` for (const auto& a : file_regions)...