vyx-lucy-kaplun
vyx-lucy-kaplun
@fritzsedlazeck Thank you! Yes, I realize that it is not intended for that purpose. I am calling tandem repeat expansions as duplications or insertions and processing them further. This variant...
@fritzsedlazeck Thank you. I will try that
@fritzsedlazeck I am trying now minimap2 with `ava-ont` option. Will let here know as some as I see any results, but I am reluctant to relax the mapping settings too...
@fritzsedlazeck Yes, I tried tandem repeat caller. It is ONT, I tried strglr, and it yielded nothing. Indeed, you are right, the variant is very long. I tried different variant...
@fritzsedlazeck Thank you. I am afraid they are also not doing too well with very long variants.
Thank you!