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                                            vwucher

Parser::parseGTF => Data Structure returns an empty hash

Hi @joelnitta , First, thanks for all the info and the files (it help to debug)! In fact the "error" is in the file `daphnia_genome.gtf`, the biotype are not as...

Parser::parseGTF => Data Structure returns an empty hash

Hi, I didn't fix the file. I just changed your command line by replacing `protein_coding` by `mRNA`. Did you tried that? Bye

FEELnc_filter.pl -b transcript_biotype=protein_coding

Hi, Sorry for the delay of the answer. GENCODE change their name for the `biotype`. It is now called `type`. Did you try running the command with `-b transcript_type=protein_coding`? Hope...