Amy Paguirigan

Support S3 copy object over 5.3GB (multi-part uploads)

5

Currently `paws.storage::s3$copy_object()` does not support copying objects larger than 5368709120 bytes, which is when AWS requires multi-part uploads. Presumably `put_object` doesn't either. Error you get is this: ``` Error: InvalidRequest:...

reading in Struct's and Array[Struct] from TSV/json to replace `read_objects`

7

I'm sitting down to try to summarize the convo about getting data read into an array of Structs. The situation arose from the removal of the `read_objects` function, which could...

Get and put object tagging

2

Please specify whether your issue is about: - [ ] a possible bug - [ ] a question about package functionality - [x] a suggested code or documentation change, improvement...

Please specify whether your issue is about: - a suggested code or documentation change, improvement to the code, or feature request I just used `copy_object` and ran into the 5GB...

This repo looks like maybe some decisions need to be made as to what (if any) PRs need to be merged prior to a new release being made, prior to...

I'm working through the remaining decommisioning of the Data Generation section. Now the last things that are remaining before full decom is the biospecimen banking which is being addressed in...

### URL of existing content (a rendered, sciwiki.fredhutch.org link) https://sciwiki.fredhutch.org/datascience/hutch_courses/#wdl-101 ### Specific information requests or concerns, or specific region on page of content to refresh. We should update this text...

Add author contribution list to bottom of each page

2

Long term goal: On the bottom of each page, render a list of the users who have commits on the master branch with edits to the file that makes each...

Do we have shared reference datasets that we can use for bioinformatics?

2

**Proposed Domain** Scientific Computing - New page in Reference and Announcements? ReferenceDataSets.md **Content Summary** Where can I find reference data sets for my computational work that are already available in...

Consider integrating the AWS Lambda commit into gitlab

3

Right now last modified dates are continuously updated vi an automated commit after a AWS Lamba process. We should consider sometime integrating that into the newer GitLab build process so...