Vikram K. Mulligan

icon indicating a website link http://vmulligan.deviantart.com icon indicating an email [email protected]

icon company Flatiron Institute icon location New York, NY icon location Ph.D., University of Toronto (Biochemistry), B.Sc., University of Toronto (Biochemistry sp./Physics maj.)

Results 4 comments of Vikram K. Mulligan

added loop modeling chapter + accompanying files

GenKIC should be fully configurable from PyRosetta. I know that @weitzner has done it. The current GenKIC tutorials (https://www.rosettacommons.org/demos/latest/tutorials/GeneralizedKIC/generalized_kinematic_closure_1, https://www.rosettacommons.org/demos/latest/tutorials/GeneralizedKIC/generalized_kinematic_closure_2, https://www.rosettacommons.org/demos/latest/tutorials/GeneralizedKIC/generalized_kinematic_closure_3, https://www.rosettacommons.org/demos/latest/tutorials/GeneralizedKIC/generalized_kinematic_closure_4) are for RosettaScripts, but there's an almost 1:1...

added loop modeling chapter + accompanying files

Nice! Thanks, Jordan! On Wed, Dec 25, 2019, 4:09 AM Jordan Willis, wrote: > Here is genkic in pyrosetta > > > https://github.com/jwillis0720/PyRosetta_helper/blob/master/tutorial/GK_Demo.ipynb > < > https://github.com/jwillis0720/PyRosetta_helper/blob/master/tutorial/GK_Demo.ipynb > > >...

Feature request: "best current practices" page

>The intention of the system document https://docs.dwavesys.com/docs/latest/doc_handbook.html is to always provide the current best practices in using the D-Wave system and formulating suitable models, and problems to be aware of...

Request to add tutorial for building cyclic peptides

There's no tutorial on designing cyclic peptides with PyRosetta because that's not what we've used for this purpose in the past. The 2017 Hosseinzadeh _et al._ paper has all of...