Vladimir Mikryukov

Results 20 issues of Vladimir Mikryukov

Hello! This PR fixes a small typo in README file. Option `overlap_diff_limit_percent` should be `overlap_diff_percent_limit`. Best regards, Vladimir

## PR checklist Closes https://github.com/nf-core/modules/issues/2214 - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug or added code that should be tested,...

### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...

new module

### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...

new module

### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...

new module

Hello! When using the interactive tree visualization feature in the latest version of ETE4 (tested with `ete4==4.0.0b2`), the functionality to download a tree in Newick format via the control panel...

A tiny `sourmash` database is required for testing in `taxprofiler`. It will be based on the same input data as used for the other test databases in `taxprofiler`. Related with...

It would be beneficial to introduce a (machine-readable) table or list of diversity indices supported by Biodiverse, detailing the properties of each index, to assist in automatically selecting appropriate visualization...

Hello! Currently, Biodiverse only supports plotting rectangular grid cells in the GUI. I would like to propose extending the plotting functionality and adding support for custom shapefiles. For instance, Uber's...

enhancement

Hello Jennifer! I’m glad that you plan to improve `ghost-tree`! I would like to add another enhancement request to the list. Currently, for each genus `ghost-tree` takes the first sequence...

enhancement