Vladimir Mikryukov

Results 18 comments of Vladimir Mikryukov

There is another option - [furrr](https://github.com/DavisVaughan/furrr). The goal of furrr is to simplify the combination of `purrr`’s family of mapping functions and `future`’s parallel processing capabilities.

Hello Gabrielle! Thank you for reporting this issue! This error is related to the iNEXT update, for which a new major version was recently released. I will try to fix...

Probably related with issue #22

Finally, the first stepping stone! Multiple rarefaction was parallelized with plyr (decf7ae).

Hello! It's difficult to diagnose the problem without seeing the data. Are OTUs arranged by columns or by rows (you may check it with `taxa_are_rows(your_phyloseq)`)? Also, I've noticed that iNext...

Notes: RTK performance and memory consumption was compared with vegan v.2.4 ([Saary et al., 2017](https://academic.oup.com/bioinformatics/article/33/16/2594/3111845)). However, rarefaction was greatly improved in [vegan v.2.5-1](https://cran.rstudio.com/web/packages/vegan/news.html): `Random rarefaction (function rrarefy) uses compiled C...

While it is certainly possible to map sequence IDs to NCBI taxIDs, taxonomy presented in NCBI could be incorrect. In sequence headers from UNITE, taxonomic lineage information was re-annotated, e.g....

Hello Andrea, Thank you for reporting this issue. I'm afraid the current implementation of `adonis_pairwise` does not support `strata` argument. I will add this enhancement to the to-do list.