Vamsi Kodali

> Thanks. Very good suggestions. I will consider this. Much appreciated. I'd be happy to provide additional examples, and help with review/testing if you need.

Thank you very much!

@bbuchfink -- I just noticed the new option `--sam-query-len` in the latest version of `diamond`. Thank you! The use of `ZQ:` however does not conform to the SAM spec of...

Thank you @lh3 for taking a look at this. The "compart logic" used in Splign is described here: https://pubmed.ncbi.nlm.nih.gov/18495041/ Binaries for Splign and Compart as well as the source code...

@lh3 -- just checking if you have had a chance to look at the compart code...

> Actually it occurs to me that `-J` should be larger than `-F` Thanks! Looks like at some point in the past, the default value for `-F` was set to...