Biopig

Function request: resi label with less overlap

1

Hi, @BradyAJohnston @swsoyee About the m_add_res_labels() Can you add some function to make the label scatter and with less overlap with the plot? like this figure (probably made by AI...

How can I download the data from EpiFlu database?

7

Hi, @Wytamma How can I download the data (e.g., H1N1) from the GISAID EpiFlu database using GISAIDR? Best, Yang

对UpNote剪裁的支持的功能请求

Can you provide submission of pathogenic sequences other than COVID-19 (e.g influenza virus)?

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Hi, @maximilianh It's a useful tool for submitting viral sequences in bulk. I am wondering to know if it was possible to provide submission of pathogenic sequences other than COVID-19...

Hi, Dr. Yu @GuangchuangYu ``` library(rvcheck) rvcheck::update_all(check_R = FALSE) ``` When I update the Bioconda packages in my Jupyterlab IDE (conda), I met an error: ``` Error in utils::menu(versions, title...

Hi, @emmahodcroft @hxnx-sam When I was trying to convert to the MCC tree to newick in R, I met an error like this. The code is from [here](https://github.com/emmahodcroft/cluster-picker-and-cluster-matcher/blob/master/docs/ClusterTutorial/MCC_to_NWK.R): ``` Warning...

AttributeError: module 'pkgutil' has no attribute 'ImpImporter'. Did you mean: 'zipimporter'?

3

MacOS M1 Version 14.5 Python 3.11.6 How meet the error？ `pip install -r requirements.txt` What the error: ``` Requirement already satisfied: beautifulsoup4 in /Users/*/miniconda3/envs/bio/lib/python3.12/site-packages (from -r requirements.txt (line 2)) (4.12.2)...