Vini Salazar

Thanks @meren, the fix seemed to have been simple enough, I'm running some additional tests to make sure I didn't blow up anything. Also, cc'ing @FlorianTrigodet as we were talking...

> I remember looking at his and realizing that addressing this properly will require much more than a single change as I had initially suspected To elaborate, I was inclined...

Hi @bamorim-bio, thanks for posting the BBTools fix. I still get the "different read numbers" warning, but fastp now runs to the end!

@sfchen thank you for providing fastp. It's amazing. Would you have an estimate as to when you could incorporate these fixes and release a new version? I'm sure it would...

There's the 'Practice working on a project' challenge in Episode 02. I believe that this could go there? I would suggest that an easy way to supply the files would...

Sure. I will create a repository on my own profile and if that's satisfactory it can be imported into the Carpentries Incubator org.

Hi @LiamPattinson, thank you for the issue. I meant to do some work on this lesson back in 2021 but could never get around to it. So, a major update/merging...

> You shouldn't be in the conversion directory, but in the top level directory. I agree. However, the episode states: > Now, if we launch a new python terminal from...

I pushed #78 addressing the observations from the last comment. [This StackOverflow issue](https://stackoverflow.com/questions/34753206/init-py-cant-find-local-modules) explains the reasons for the errors (it is necessary to use local imports). Edit: thanks for the...

Hi, just coming to report I am facing the same problem, I performed QC and trimming with Fastp, host removal with Minimap2, paired reads with [fastq-pair](https://github.com/linsalrob/fastq-pair) to ensure same amount...