Vincent

Brute force Checklist.

2

As suggested by Markus Piotrowski Checklist: 1. Title - The title in the markdown file may be changed into something more user-friendly (https://github.com/biopython/biopython.github.io/issues/22) - Take care that the title is...

Remove? Multiple_Alignment_Format.md

1

Most of this seems invalid. https://github.com/biopython/biopython.github.io/blob/master/wiki/Multiple_Alignment_Format.md

Should MotifDev.md be removed?

1

Not knowing the history I am not sure, I think MotifDev.md should just be removed. https://github.com/biopython/biopython.github.io/blob/master/wiki/MotifDev.md

Review dependancies, applications page

1

I checked all the links and what is there seems correct. Is it complete? I think there are automated tools for discovering dependencies. https://github.com/biopython/biopython.github.io/blob/master/wiki/List_of_applications_executed_via_Biopython.md

Looks like gbif.org has been updated and the bioGeography needs to be updated. https://github.com/biopython/biopython.github.io/blob/master/wiki/BioGeography.md

Thanks for the tutorial! The tutorial could benefit from adding links to available option in app.config. The link provided documents the connect() settings for mongoengine. I was only able to...

travis-ci for tests.

3

If you can setup travis-ci account, I will configure the .travis.yml file. This will also help if you really want to add python2 support.

Add documentation on how to upload files

4

### Checklist - [X] I added a descriptive title - [X] I searched for other feature requests and couldn't find a duplicate (including also the ``type-feature`` tag) - [X] I...

Updating notebooks using Git pull changes owner to root

3

If you use git pull to update the notebooks the changed files get the owner and group root:root. This makes the notebook unable to be saved. I tried correcting this...

Update utility and using oui.csv

1

I would like to add the ability to numbers update locally. I am not sure how that looks in the end. I don't think trying to update an installed package...