Luigi Petrucco

## Description I would like to use a symmetric diffeomorphic transformation that I computed on a stack to also move the the transformed space a matrix (3 x n) of...

Moving toward better atlas versioning

1

This issue comes from a long discussion that I had with @nickdelgrosso on those points. Will lay it out in full here, so that we can discuss it better at...

Distributing custom atlases

8

I have the first occurrence in the lab of a scenario where I would need to generate an high res atlas of a subregion of fish brain. We mentioned this...

Sort out confusion with cartesian/ij indexing

55

As per the slack discussion: There is some ambiguity when working on displaying numpy arrays, coming from the fact that image-first applications (eg: matplotlib, brainrender) have the convention that as...

Inconsistent datasets from `EcephysSession.presentationwise_spike_times method`

1

**Describe the bug** The dataset instantiated by the `EcephysSession.presentationwise_spike_times` when there are not spikes that get included has different structure from when there are spikes (different column names). This is...

**Describe the use case that is addressed by this feature.** I am downloading the Visual Coding Neuropixel data. I use the following code to download the `.csv` files and metadata:...

`from_npz()` method for loading

4

As far as I could find in the docs, there is a convenient method for saving a Tsd as a npc file, but putting it back together would always require...

Mapping time arrays on each other

11

Hi, I am adopting the very convenient Tsd class in my code. I have this issue I encounter often when synching data: using a synching signal to map times from...

It is difficult to test the loading classes as the sample data is pre-loaded `nwb` files which leave large parts of the code uncovered. It would be better to replace...

There should be a way of specifying the units of the log files that get saved. This could be a list for all the columns of the log files that...