Victor Lin

@joverlee521 that's good to know. Do you expect that those builds would benefit from newer features of Augur? Or can it also vendor its own version of Augur, similar to...

@BEFH No, I haven't done any benchmarking. I imagine it's comparable though. The benefit would be one less runtime dependency (mamba).

Hi @m-d-grunnill, This looks like a bug indeed. The relevant error is: ``` File "[/NetDrive/Labs/Duvvuri/Martins_VM_Programs/anaconda3/envs/omics/lib/python3.11/site-packages/augur/utils.py](https://file+.vscode-resource.vscode-cdn.net/NetDrive/Labs/Duvvuri/Martins_VM_Programs/anaconda3/envs/omics/lib/python3.11/site-packages/augur/utils.py)", line 142, in default return super().default(obj) ^^^^^^^^^^^^^^^^^^^^ File "[/NetDrive/Labs/Duvvuri/Martins_VM_Programs/anaconda3/envs/omics/lib/python3.11/json/encoder.py](https://file+.vscode-resource.vscode-cdn.net/NetDrive/Labs/Duvvuri/Martins_VM_Programs/anaconda3/envs/omics/lib/python3.11/json/encoder.py)", line 180, in default raise TypeError(f'Object...

@m-d-grunnill thanks for sending that. The notebook is taking a long time on the IQ-TREE step, but I was able to reproduce the same error in other ways and created...

@m-d-grunnill sorry for the delay here, I was out on vacation! I've just merged the fix and will release it as version 22.0.3 now.

@m-d-grunnill I did a deeper investigation of the code today and am now thinking this error may be due to something unexpected with the user data, not `augur refine`. I...

Docs CI should also check that all Python modules under `augur/` have a corresponding `.rst` file and properly included in at least the Developer API docs (e.g. to ensure discrepancies...