Victor Alfonso Leiva Alarcon
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Victor Alfonso Leiva Alarcon
Thanks for the quick response! I decided to re-run the command using --motif A 0 and compare the output to my previous pileup, which included all modifications: `$PATH_modkit/modkit pileup $Run01_sup_all_mods_v1_0_0_bam...
I think is better to share the logs, here they are : [with_motifA.log](https://github.com/user-attachments/files/20779135/with_motifA.log) [without_motifA.log](https://github.com/user-attachments/files/20779136/without_motifA.log)