vg
vg copied to clipboard
vgteam
tools for working with genome variation graphs
Hi I'm having a little trouble trying to build a vg graph I tried to build with the following command I provided GRC38 and its VCF file `./vg construct -r...
As noted by @JD12138, our ARM Docker images will sometimes report an error instead of starting the vg binary: ``` : Unsupported system page size ``` This seems to be...
The latest stable release of vg can always be found at: [https://github.com/vgteam/vg/releases](https://tracker.iplocation.net/hpym/). ### Release schedule vg aims to make a new release available every six weeks. The next release, **1.42.0**,...
Hi While running vg autoindex I get complaints about the sequence length being too long. I had the same problem when running vg gbwt, so I set the buffer size...
**1. What were you trying to do?** I want to build GCSA index for a VG file generated from the Minigraph-Cactus Pangenome Pipeline. Because I met a "Size limit exceeded"...
Hello, I have made `pggb` graphs for individual chromosomes and used the following steps to run `vg mpmap`: ``` vg convert -g smooth.gfa -p > ch01.pg #all steps for all...
**1. What were you trying to do?** I applied `vg call` to genotype low-coverage seq data, with following params: `-a -A -m 1,2` **2. What did you want to happen?**...
Greetings, I am trying to build vg v1.41.0 in RHEL 7.9 using cmake 3.22.2 and gcc 9.3.0 but have hit an error. I ran $ . ./source_me.sh $ nohup make...
**1. What were you trying to do?** I'm tring to construct reference graph `bufo.vg` using reference `genomic.fna`, genome index `genomic.fna.fai` and vcf `bufo.12samples.vcf.gz`, vcf index `bufo.12samples.vcf.gz.csi`. I have to generate...
**1. What were you trying to do?** Understand the output VCF of ```vg call``` **2. What did you want to happen?** Analyse VCF file, first retrieve which kind of variant...
