Alexander Kutschera
Alexander Kutschera
This issue is part of the [MiPi:zap: extension](30)! **We want to develop an agar plate imaging and live colony counting system!** Because colony counting will be relying on image analysis...
We need a script which generates a plot of the migration area and migration speed for each picture. The plots can later be combined with the pictures to create a...
The software will be server based and should be accessible via a web interface. It needs: - Data upload function - Analysis Settings (output in pixel or mmˆ2, petri dish...
The next step after [localizing the agar plate](https://github.com/vektorious/mbac/issues/4) is the identification of bacteria on the agar plate. They will appear as a white area which starts to spread over time....
#### We urgently need feedback on the project to improve it and avoid problems before they arise! If you already have experience with swarming motility experiments let us know which...
What do you think about the project description, the aim of the project or maybe you have a good idea which you would like to add? Your feedback, your ideas...
After [calculating the migration area in one picture](https://github.com/vektorious/mbac/issues/5) we can perform the same analysis for all pictures from a time series. In this way we can track the migration over...
Prototypes of the lighting camber [main body](https://github.com/vektorious/mbac/issues/1) and the [lid with the camera](https://github.com/vektorious/mbac/issues/2) have to be tested in a real experiment. If you want to test the setup but you...