covidcg

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Tolerate frameshifting indels as long as they are resolved within 10 codons Also simplified the mutation code slightly - hopefully the algorithm is more readable now

atc3

Bumps [browserify-sign](https://github.com/crypto-browserify/browserify-sign) from 4.2.1 to 4.2.2. Changelog Sourced from browserify-sign's changelog. v4.2.2 - 2023-10-25 Fixed [Tests] log when openssl doesn't support cipher [#37](https://github.com/crypto-browserify/browserify-sign/issues/37) Commits Only apps should have lockfiles 09a8995...

dependabot[bot]

Bumps [werkzeug](https://github.com/pallets/werkzeug) from 2.0.2 to 3.0.1. Release notes Sourced from werkzeug's releases. 3.0.1 This is a security release for the 3.0.x feature branch. Changes: https://werkzeug.palletsprojects.com/en/3.0.x/changes/#version-3-0-1 3.0.0 This is a feature...

dependabot[bot]

Bumps [@babel/traverse](https://github.com/babel/babel/tree/HEAD/packages/babel-traverse) from 7.16.8 to 7.23.2. Release notes Sourced from @​babel/traverse's releases. v7.23.2 (2023-10-11) NOTE: This release also re-publishes @babel/core, even if it does not appear in the linked release...

dependabot[bot]

Bumps [postcss](https://github.com/postcss/postcss) to 8.4.31 and updates ancestor dependencies [postcss](https://github.com/postcss/postcss), [autoprefixer](https://github.com/postcss/autoprefixer), [css-loader](https://github.com/webpack-contrib/css-loader), [cssnano](https://github.com/cssnano/cssnano) and [postcss-loader](https://github.com/webpack-contrib/postcss-loader). These dependencies need to be updated together. Updates `postcss` from 7.0.39 to 8.4.31 Release notes Sourced...

dependabot[bot]

- When hovering over a mutation in the entropy bar plot, also create a line mark on the coverage plot (with another popup?) - When hovering over the coverage plot,...

atc3

Group mutation frequency API method – default selected reference when not specified

1

Also if time allows - look through other API functions and see if any other endpoints would benefit from this. Should also just start writing unit tests...

atc3

Stacked Bar Charts on Home Page

2

Replaces the line charts used for surveillance on the home page with bar charts. Stacking not currently working but WIP.

a13xk13m

download mutation list data matrix covid-cg2.5.2

5

Hello, Is it possible to download the mutation list data matrix of the covid cg 2.5.2 for sars-cov-2? I can't find the data matrix in the folder covidcg-2.5.2 (https://github.com/vector-engineering/covidcg/releases/tag/v2.5.2) I...

carlottaolivero

Some sequences that don't include G are assigned a genotype (A, B) by the submitter, and it's clearly marked under the "source" field of the "FEATURES" section in the GenBank...

atc3