DiaNN
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vdemichev
DIA-NN - a universal automated software suite for DIA proteomics data analysis.
library
Dear author, hello. I encountered the following issue while running the source code and am not sure how to resolve it. 错误(活动) E1696 无法打开 源 文件 "C:/Users/asus/Desktop/DiaNN-c750a669a84d23a233ce43488b43d1c9725f47da/diann/x64/Release/libid:F0C5F3E3-4F2A-443E-A74D-0AABE3237494.tlh" diann C:\Users\asus\Desktop\DiaNN-c750a669a84d23a233ce43488b43d1c9725f47da\mstoolkit\include\MSReader.h 39...
Dear Vadim, I have some issues with identifying high confidence proteins from SWATH data acquired on ZenoTOF 7600. I am using fasta predicted library. The SWATH data should contain about...
We are interested in a protein that produces mostly short peptides. Therefore, we did try to make a DIANN search which includes peptides of length `6` by setting the parameter...
Dear Vadim, I have some issue to treat data acquired with a Sciex Zeno-SWATH. I did copy all the MS-convert files containing Sciex or core in their name into the...
I am trying to direct-search HeLa raw file in DIA-NN 18. There is no searched data at the end. Below is the report.log which says [25:57] Loading run D:\Jae_DIA_practice\1_200 ng...
Dear Vadim, I am trying to make DIANN recognise a possible chemical modification I introduced at the cysteine level. What I did was to call a new modification, named 3333,...
Is there a way to not use assumption that cysteines are carbamidomethylated in MaxQuant result? Will it work if I add an artificial mod to cysteine, e.g (Unmod) and set...
Dear Vdemichev, I am using Waters Synapt G2 to do IMS proteomics experiment. I have converted the raw files using proteowizard and I combined the ion mobility scans. I started...
What is the equivalent command for generating a pdf report in linux? ```DIA-NN-plotter.exe "H:\tmp\report.stats.tsv" "H:\tmp\report.tsv" "H:\tmp\report.pdf"``` /usr/diann/1.8.1/ folder only contains diann-1.8.1 executable. I don't see a DIA-NN-plotter executable or a...
Hello, I am working with a large cohort of DIA samples and would like to run DiaNN sample by sample if possible. I was wondering how match between runs works...
