vdechand

Results 5 comments of vdechand

using snakemake shadow rules to store temp files on local nodes

> ``` > workflow.shadow_prefix = some_function_to_edit_the_prefix(workflow.shadow_prefix) > ``` Is it possible to change the shadow prefix on a job/rule basis? Our HPC creates a temp directory on a node-local SSD...

using snakemake shadow rules to store temp files on local nodes

Thanks for your willingness to help @pvandyken! What would save me a lot of work is to have the argument of `--shadow-prefix` be evaluated at job execution. In our (eccentric)...

using snakemake shadow rules to store temp files on local nodes

Thank you very much, I will try this solution. Empty files in the working directory should not be problematic.

using snakemake shadow rules to store temp files on local nodes

> Following up on your first edit, @pvandyken - I've just given it a try and your thoughts on using `workflow.run_local` do work well. On our system `$TMPDIR` translates to...

accepted change from santosh on github

Hi, I wish I could help you with that, sorry. The reality is that I haven't used dask since 2019.