Vahid Akbari

icon company BC Cancer and University of British Columbia icon location Vancouver icon location Postdoctoral Fellow, BC Cancer & University of British Columbia

Results 5 comments of Vahid Akbari

Instruction about mod_mapping format

Thanks @marcus1487 , So, is it possible to get a bam output from megalodon with the base modification tag and the actual basecalled sequence of the read? I mean sth...

Multi_read Fast5s

Hi @PengNi , Thanks for your kind response. I am looking forward to hearing about the new update.

Multiple GPU device

Thanks a lot @marcus1487

Guppy basecalled FAST5 files

Great! thanks, @mitenjain . I will try and let you know.

Could modbam2bed output files be used as input methylation call files?

Hi @CWYuan08 , If your bam is a haplotagged bam you can get phased methylation from modbam2bed itself. If you want to use the DMA module to do differential methylation...