Zhen Qiao

Thank you so much for your swift reply! (1) The input VCF file was phased. Btw, interestingly, I ran the phasing step using both Eagle2 (--Kpbwt=100,000) and Shapeit (as described...

Update: I've attempted to transform the Seurat object to an h5ad file using another R package, but unfortunately encountered the same error. This leads me to believe that the problem...

Hi @martinjzhang, Thank you so much for your response! I really appreciate your help! I noticed that the error I encountered was due to NAs in the covariate file, which...

Hi Martin, I apologize for asking so many questions, but I'm looking for some advice on how to proceed if no cells are significant at certain FDR thresholds (0.1 or...

Hi Martin, Thanks so much for your reply! It has been incredibly helpful!! I've got some interesting results and I'm currently working on understanding and interpreting them. I have a...