unito-bot
unito-bot
The docker-in-docker machinery we use in CI will print errors about docker.sock that aren’t important. We should make it stop trying to do whatever it is trying to do, because...
We need a way for the user to describe how to structure the autoscaling groups in terms of what instance types and regions should be in a group. Specifically multiple...
Toil supports Singularity in its CWL and WDL runners. But we don’t really have any documentation that answers the question “How do I use Singularity with Toil?”, especially in the...
Again trawling the WDL Nightmares Slack: [https://ucsc-gi.slack.com/archives/C01PYTNEWP6/p1626818378077400](https://ucsc-gi.slack.com/archives/C01PYTNEWP6/p1626818378077400|smart-link) ┆Issue is synchronized with this [Jira Story](https://ucsc-cgl.atlassian.net/browse/TOIL-1419) ┆Issue Number: TOIL-1419
We should pre-validate WDL workflows so we don’t run into trouble running them later, assuming the MiniWDL parser doesn’t catch all the possible `miniwdl check` errors already. ┆Issue is synchronized...
We could simplify the codebase by removing the actual job storage from the Google job store, leaving only the machinery for accessing `gs://` URIs for input and output for workflows....
We should deprecate and remove the Toil in-workflow autoscaler, in favor of Toil-managed Kubernetes clusters with the Kubernetes autoscaler. ┆Issue is synchronized with this [Jira Story](https://ucsc-cgl.atlassian.net/browse/TOIL-1413) ┆Epic: jira:ucsc-cgl.atlassian.net:33260 ┆Issue Number:...
Since we’re planning to remove Toil’s support for creating Mesos clusters, we won’t be able to CI the Mesos batch system. We should remove it, maybe into a plugin repo,...
We have unreleased code to deprecate the Mesos cluster type, as of this writing. Once we have released that, we should remove the Mesos cluster type in the development version...
Toil has a lot of features that maybe were historically useful, but which now take more effort to maintain than they seem to provide value to people. We should deprecate...