Shuo Cao

The quality of genotyping is low

2

Hi I completed the genotyping of all samples (the previous error was not resolved, so I replaced one of the samples). After merging them, I conducted quality control. Unfortunately, the...

erro when using kage genotype

12

Hi~ In the last days, I tried to use kage to genotype my population, but it won't work well, please help me take a look: ''' kage genotype -i 2/PN2_SNP...

Error when running kage index

21

Hi, I encountered an error while running the kage index, which seems to be an issue during the parsing of the VCF file. My input files were a chromosome from...

looking for some suggestions

3

If I want to genotype SNPs, InDels and SVs, should I create two indexs, one for SNPs and InDels, and another for SVs, then run kage genotype twice?