Shuo Cao

Hi @oushujun, sorry, I got the same issue with Xu, if you fixed it please let me know. thanks! best Shuo Cao

hello why don't you try to split the file, one by one to use cd-hit, then cat them together? In my opinion, there is no bias if you do so.

Hi! Thank you for sharing! I have completed the entire genotyping process, including both SNPs and SVs. However, it seems to be inadequate for downstream analysis because when I use...

Hi Thanks a lot, it works! Kage is the best !!!🫡

Hi Sorry for bothering you again🤣, it seems like I have a question again. ''' ERROR: Found positive value in FORMAT/GL for individual [SRR5627788] at site [PN2:1358201_CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATT_CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTT] [E::hts_open_format] Failed to...

Hi I updated it to version 2.0.4, but this error is still there. Maybe I should provide more message about this erro: '''' Finalization: * VCF writing [68%]63%] ERROR: Found...

Of course, which method of file transfer are you more comfortable with?

Hi Ivargr I got a problem again when I use Kage to genotype SVs. I attache the Erro below, wish it would be helpful. ''' Parsing specified genomic regions *...

> Thanks for sharing! Is this when genotyping SVs or SNPs? Is this using any of the data you shared with me earlier? It occurs when I use kage to...

Hi, Sorry for the delay, here is a subset of the VCF. Hope it's useful! [demo.vcf.txt](https://github.com/kage-genotyper/kage/files/13797832/demo.vcf.txt) Sincerely, Shuo