u1200538

Hello, I run the svtyper by using lumpy SV vcf file as a input. When I saw the genotyped sv file, it contained "./.", "0/0 genotype information.  1. In...

**Describe the issue** A clear and concise description of what the issue is. **To Reproduce** 1. SnpEff version: 5.0e 2. Genome version: hg38 3. SnpEff full command line: java -jar...

lumpy Ouput vcf file

1

Hello, Its my first time to use lumpy. so I've just tired lumpy express with NA128768 sample as an input. As a result, I successfully got the SV vcf file,...

Question about --use-smith-waterman option

4

Hello, I am glad to post about using the isaac4 aligner. I am wondering that Isaac aligner --use-smith-waterman smart option. --use-smith-waterman arg (=smart) One of the following: - always :...