Abdomen-CT-Image-Segmentation
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tureckova
The code for the paper Improving CT Image Tumor Segmentation Through Deep Supervision and Attentional Gates.
The guide says to use the line `python inference/predict_simple.py -i INPUT_FOLDER -o OUTPUT_FOLDER -t TaskXX_MY_DATASET -tr nnUNetTrainer -m [3d_fullres/3d_lowres] --vnet=[0/1]` in order to do inference. But the --vnet flag does...
If I run `python run/run_training.py 3d_lowres nnUNetTrainer Task500_HNC01 0 --ndet --vnet=0` and then `python run/run_training.py 3d_lowres nnUNetTrainer Task500_HNC01 0 --ndet --vnet=1` The contents of the results folder at `network_training_output_dir` is...
When doing `pip install -e .` I had to add `py_modules=[],` in the setup.py file to avoid the error below. ERROR: Command errored out with exit status 1: command: /homes/kovacs/anaconda3/envs/tureckova_dgk1_vnet/bin/python...
I got longer error while following the readme and running `python3 experiment_planning/plan_and_preprocess_task.py -t TaskXXX_Pancreas -p X`. The error end with: TypeError: resize_segmentation() got an unexpected keyword argument 'cval' Copying the...
Hi I am working on reproducing your attention gated version of nnUNet. When I run python3 experiment_planning/plan_and_preprocess_task.py -t TaskXX_XXXX -p X It fails after populating cropped_output_dir due to an error...
Hello! I have encountered some problems. After installing nnunet according to the steps, I run the command "python3 experiment_planning/plan_and_preprocess_task.py -t Task017_AbdominalOrganSegmentation -p 8", and there is an error " ModuleNotFoundError:...
