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Published 20 hours ago • verified publisher icon tureckova

ExperimentPlanner bug

Open davidkvcs opened this issue 2 years ago • 0 comments

Hi

I am working on reproducing your attention gated version of nnUNet.

When I run python3 experiment_planning/plan_and_preprocess_task.py -t TaskXX_XXXX -p X

It fails after populating cropped_output_dir due to an error in line 133 of plan_and_preprocess_task.py, that ExperimentPlanner does not exist.

Here I noted that in lines 123 and 124 you had:

from nnunet.experiment_planning.experiment_planner_baseline_2DUNet import ExperimentPlanner2D
# from nnunet.experiment_planning.experiment_planner_baseline_3DUNet import ExperimentPlanner

Which I am guessing should be changed to:

# from nnunet.experiment_planning.experiment_planner_baseline_2DUNet import ExperimentPlanner2D
from nnunet.experiment_planning.experiment_planner_baseline_3DUNet import ExperimentPlanner

Do you agree on this?

Best regards David

davidkvcs avatar Apr 26 '22 11:04 davidkvcs